PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G156300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 298aa    MW: 31311.6 Da    PI: 4.9422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G156300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.3e-3186144259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp +v +tY+ eHnh+
  Brast01G156300.1.p  86 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSQADPAMVLVTYSYEHNHS 144
                         69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.15980146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-3082144IPR003657WRKY domain
SuperFamilySSF1182901.22E-2583144IPR003657WRKY domain
SMARTSM007749.9E-3885145IPR003657WRKY domain
PfamPF031065.1E-2687143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDGEWSEGAV TMSGGEQKAR RDGVSVDSSG SGPGSPLSPP PTAAPSTTSS ASGKQRRSLQ  60
KRVVSVPLAD VSAPRPKGVG EGNTPTDEWA WRKYGQKPIK GSPFPRAYYR CSSSKGCPAR  120
KQVERSQADP AMVLVTYSYE HNHSTTVANR AQQNRQAHKP KDQPDQPAKA DDANVVSDSP  180
PAAAAIEVHD EFKWLYDVVS VASSSSDAEA ADDLLLYGPM FFGKAAVDTA SGGAFLPDEF  240
GFGDAACGER SEEDDAMFAG LGELPECAMV FRRHAGDGLA MLGGVKVEQP AEGTAMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17871431671WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568231e-97AK356823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1040G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232262.11e-158PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A0Q3R8V21e-158A0A0Q3R8V2_BRADI; Uncharacterized protein
STRINGBRADI2G48907.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-45WRKY DNA-binding protein 65